ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000251287.3 ENST00000251287.3_396_409_+ 396–409 381.00 34.05 1.83 100.0 HCN2-201 protein coding transverse colon (Tissue)
ENST00000284727.9 ENST00000284727.9_2255_2286_+ 2255–2286 121.00 36.23 0.58 100.0 ATP5MC3-201 protein coding transverse colon (Tissue)
ENST00000302506.8 ENST00000302506.8_1928_1942_+ 1928–1942 79.00 68.10 0.38 100.0 CDC25A-201 protein coding transverse colon (Tissue)
ENST00000308873.11 ENST00000308873.11_348_362_+ 348–362 613.00 56.03 2.94 100.0 RUNX3-201 protein coding transverse colon (Tissue)
ENST00000320776.5 ENST00000320776.5_289_301_+ 289–301 10149.00 91.30 48.66 100.0 BLOC1S4-201 protein coding transverse colon (Tissue)
ENST00000321990.5 ENST00000321990.5_6301_6324_+ 6301–6324 505.00 35.69 2.42 100.0 ATAD5-201 protein coding transverse colon (Tissue)
ENST00000325089.7 ENST00000325089.7_9_20_+ 9–20 161.00 12.96 0.77 100.0 SLITRK5-201 protein coding transverse colon (Tissue)
ENST00000325418.5 ENST00000325418.5_207_220_+ 207–220 140.00 58.82 0.67 100.0 HASPIN-201 protein coding transverse colon (Tissue)
ENST00000336854.9 ENST00000336854.9_1124_1136_+ 1124–1136 375.00 90.80 1.80 100.0 ATG101-201 protein coding transverse colon (Tissue)
ENST00000345127.9 ENST00000345127.9_4554_4567_+ 4554–4567 47.00 41.23 0.23 100.0 PRICKLE1-201 protein coding transverse colon (Tissue)
ENST00000347538.2 ENST00000347538.2_59_81_+ 59–81 299.00 98.03 1.43 99.67 MIR133A2-201 miRNA transverse colon (Tissue)
ENST00000358769.7 ENST00000358769.7_52_66_+ 52–66 16.00 10.39 0.08 100.0 PBLD-204 protein coding transverse colon (Tissue)
ENST00000360737.4 ENST00000360737.4_3384_3405_+ 3384–3405 80325.00 80.51 385.10 97.38 MIRLET7BHG-201 lncRNA transverse colon (Tissue)
ENST00000360737.4 ENST00000360737.4_4323_4344_+ 4323–4344 12760.00 12.79 61.18 82.66 MIRLET7BHG-201 lncRNA transverse colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_58_+ 40–58 959.00 1.63 4.60 53.43 MIR375-201 miRNA transverse colon (Tissue)
ENST00000362103.4 ENST00000362103.4_40_61_+ 40–61 57206.00 97.17 274.26 99.06 MIR375-201 miRNA transverse colon (Tissue)
ENST00000362104.3 ENST00000362104.3_59_80_+ 59–80 874.00 24.37 4.19 100.0 MIR30E-201 miRNA transverse colon (Tissue)
ENST00000362104.3 ENST00000362104.3_17_40_+ 17–40 2560.00 71.37 12.27 100.0 MIR30E-201 miRNA transverse colon (Tissue)
ENST00000362111.4 ENST00000362111.4_42_63_+ 42–63 214.00 34.97 1.03 100.0 MIR29A-201 miRNA transverse colon (Tissue)
ENST00000362114.1 ENST00000362114.1_18_39_+ 18–39 86.00 83.50 0.41 100.0 MIR345-201 miRNA transverse colon (Tissue)
ENST00000362117.1 ENST00000362117.1_10_31_+ 10–31 7974.00 99.06 38.23 100.0 MIR16-2-201 miRNA transverse colon (Tissue)
ENST00000362125.3 ENST00000362125.3_16_37_+ 16–37 207.00 94.52 0.99 100.0 MIR340-201 miRNA transverse colon (Tissue)
ENST00000362125.3 ENST00000362125.3_58_80_+ 58–80 4.00 1.83 0.02 100.0 MIR340-201 miRNA transverse colon (Tissue)
ENST00000362127.2 ENST00000362127.2_50_71_+ 50–71 366.00 56.92 1.75 100.0 MIR107-201 miRNA transverse colon (Tissue)
ENST00000362150.3 ENST00000362150.3_49_70_+ 49–70 61.00 71.76 0.29 72.62 MIR381-201 miRNA transverse colon (Tissue)