ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 8732.00 63.84 41.86 100.0 SNORD114-22-201 snoRNA transverse colon (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 4380.00 32.02 21.00 96.12 SNORD114-22-201 snoRNA transverse colon (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 25985.00 88.92 124.58 100.0 SNORD6-201 snoRNA transverse colon (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 1081.00 3.70 5.18 100.0 SNORD6-201 snoRNA transverse colon (Tissue)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 102.00 4.14 0.49 100.0 RNY3-201 misc RNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 7859.96 19.83 37.68 54.64 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 791.00 2.00 3.79 100.0 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 6386.87 16.11 30.62 44.4 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 383.00 0.97 1.84 100.0 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 1639.00 4.13 7.86 100.0 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 7424.00 18.73 35.59 91.95 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 11097.00 27.99 53.20 98.64 SNORD82-201 snoRNA transverse colon (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 22842.00 95.09 109.51 96.85 MIR146B-201 miRNA transverse colon (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 3853.00 73.32 18.47 100.0 SNHG20-201 lncRNA transverse colon (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 117.00 24.12 0.56 100.0 ATP5MK-205 protein coding transverse colon (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 4.00 0.82 0.02 100.0 ATP5MK-205 protein coding transverse colon (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 1.00 0.58 0.00 100.0 LINC01556-201 lncRNA transverse colon (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 320.00 44.88 1.53 100.0 ATAD3A-202 protein coding transverse colon (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 66.00 12.29 0.32 66.0 TMC5-202 protein coding transverse colon (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 84.00 57.14 0.40 100.0 ZMYM2-203 protein coding transverse colon (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 92.00 1.82 0.44 100.0 RNVU1-7-201 snRNA transverse colon (Tissue)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 7234.00 72.07 34.68 100.0 SNORD24-201 snoRNA transverse colon (Tissue)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 191.00 68.95 0.92 100.0 Y_RNA.389-201 misc RNA transverse colon (Tissue)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 211.00 0.12 1.01 100.0 SNORD101-201 snoRNA transverse colon (Tissue)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 451.00 0.26 2.16 100.0 SNORD101-201 snoRNA transverse colon (Tissue)