ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 12481.00 47.76 59.84 59.71 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 546.00 98.03 2.62 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 96.00 0.14 0.46 96.0 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 4.00 0.01 0.02 4.0 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 51836.00 75.64 248.52 95.32 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 7432.15 27.65 35.63 33.28 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 578.00 2.15 2.77 51.38 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 15506.49 57.69 74.34 69.95 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 283259.00 96.02 1358.03 98.94 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 509.00 16.97 2.44 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 8606.00 46.57 41.26 75.27 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 452.00 0.06 2.17 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 568.00 0.05 2.72 60.62 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 5071.00 59.09 24.31 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 66.00 1.73 0.32 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 800482.00 98.85 3837.74 99.75 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 190.00 0.31 0.91 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 40804.00 66.48 195.63 84.06 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 303.00 34.24 1.45 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 589.00 16.05 2.82 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 532.00 16.17 2.55 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 79491.00 97.97 381.10 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 4987.00 97.77 23.91 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 3092.00 18.12 14.82 88.9 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 193.00 1.13 0.93 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA transverse colon (Tissue)