ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 61.00 0.35 0.29 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 117.00 1.47 0.56 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 1663.00 20.82 7.97 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 504.00 6.31 2.42 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 796.00 9.97 3.82 71.07 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 424.00 0.02 2.03 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 2933.00 59.36 14.06 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 9.00 2.09 0.04 12.16 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 65.00 15.12 0.31 87.84 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 223.00 5.33 1.07 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 5.00 0.12 0.02 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 2256.00 82.58 10.82 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 136.00 32.46 0.65 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 524.00 57.71 2.51 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 6.00 0.03 0.03 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 54.00 0.30 0.26 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 20.00 0.11 0.10 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 494.00 2.74 2.37 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 304.00 1.68 1.46 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 23.00 0.13 0.11 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 1869.00 0.08 8.96 94.87 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 2062.00 0.08 9.89 56.85 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 2175.00 0.09 10.43 73.68 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 5793.00 32.70 27.77 76.53 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA transverse colon (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 3611.00 94.73 17.31 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA transverse colon (Tissue)