ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 1037.00 0.13 4.97 77.1 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 76689.00 9.56 367.67 99.31 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 8832.00 1.10 42.34 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 123251.00 15.36 590.90 99.77 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 467.00 0.06 2.24 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 129.00 0.02 0.62 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1081.00 0.13 5.18 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 142.00 0.02 0.68 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 916.00 0.11 4.39 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 658.00 0.08 3.15 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 11749.00 1.46 56.33 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 207.00 0.03 0.99 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1131.00 0.14 5.42 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 98529.00 12.28 472.38 84.19 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 7.00 0.00 0.03 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 217160.00 27.06 1041.13 98.66 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 79.00 0.01 0.38 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 2.00 0.00 0.01 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 17294.00 2.16 82.91 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 455.00 0.06 2.18 79.13 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1512.64 0.19 7.25 43.44 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 1118.00 0.14 5.36 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 314.00 0.04 1.51 52.86 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1190.00 0.15 5.71 100.0 SNHG1-248 lncRNA transverse colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 35.00 0.00 0.17 100.0 SNHG1-248 lncRNA transverse colon (Tissue)