ENCFF073SVL

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR316SXP
Description: Part of ENCODE experiment ENCSR316SXP. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 2700.00 92.53 12.94 100.0 SNORD113-5-201 snoRNA transverse colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 109.00 87.90 0.52 100.0 MIR15A-201 miRNA transverse colon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 4.00 100.00 0.02 100.0 MIR376C-201 miRNA transverse colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 166.00 39.62 0.80 100.0 SNHG21-206 retained intron transverse colon (Tissue)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 2828.00 92.15 13.56 100.0 SNORD11B-201 snoRNA transverse colon (Tissue)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2441.00 66.44 11.70 100.0 SNORD91B-201 snoRNA transverse colon (Tissue)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 15919.00 54.26 76.32 60.96 SNORD91A-201 snoRNA transverse colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 5694.00 47.91 27.30 97.0 MIR486-1-201 miRNA transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 21692.00 43.58 104.00 64.23 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 384.00 0.77 1.84 100.0 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 902.00 1.81 4.32 100.0 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 9870.00 19.83 47.32 84.35 NOP56-219 retained intron transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 446.00 2.37 2.14 38.75 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 5361.08 28.48 25.70 43.45 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 34.00 0.18 0.16 100.0 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 538.00 2.86 2.58 100.0 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 14.00 0.07 0.07 100.0 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 1235.00 6.56 5.92 73.47 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 6792.33 36.08 32.56 55.05 RNA5-8SN2-201 rRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 644.00 2.31 3.09 100.0 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 919.54 3.29 4.41 31.37 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 41.00 0.15 0.20 91.11 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 1.00 0.00 0.00 100.0 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 1.00 0.00 0.00 16.67 U2.3-201 snRNA transverse colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 60.00 0.21 0.29 46.88 U2.3-201 snRNA transverse colon (Tissue)