ENCFF062TYF

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 23.00 17.97 0.98 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 19.00 0.33 0.81 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 4.00 0.07 0.17 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 176.00 3.03 7.54 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 61.00 1.05 2.61 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 65.00 1.12 2.78 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 70.00 1.20 3.00 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 7.00 0.04 0.30 63.64 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 21.00 0.13 0.90 75.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 305.00 1.87 13.06 96.21 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 34.00 10.40 1.46 58.62 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 5.00 55.56 0.21 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 3.00 5.26 0.13 100.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 12.00 92.31 0.51 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 1607.00 52.62 68.80 89.18 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 5.00 0.16 0.21 29.41 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 12.00 0.39 0.51 70.59 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 332.09 49.13 14.22 84.72 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 27.00 3.99 1.16 54.0 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 89.24 13.20 3.82 22.48 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 976.00 84.36 41.79 94.21 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 195.00 11.42 8.35 64.14 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 100.00 1.28 4.28 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 52.00 1.44 2.23 81.25 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 29.00 38.16 1.24 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA GM23248 (Cell line)