ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 1114.00 19.18 7.67 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 168.00 2.89 1.16 76.36 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 90.00 1.55 0.62 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 531.00 9.14 3.65 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 2929.00 75.35 20.16 100.0 SNORD14C-201 snoRNA A375 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 15.00 3.70 0.10 100.0 RNA5SP77-201 rRNA pseudogene A375 (Cell line)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 27.00 57.45 0.19 84.38 SNORD114-22-201 snoRNA A375 (Cell line)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 12.00 25.53 0.08 100.0 SNORD114-22-201 snoRNA A375 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 75.00 0.31 0.52 100.0 SNORD6-201 snoRNA A375 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 22554.00 93.45 155.20 100.0 SNORD6-201 snoRNA A375 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 379.00 45.39 2.61 100.0 RNY3-201 misc RNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 1018.00 29.51 7.01 91.88 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 42.00 1.22 0.29 100.0 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 174.00 5.04 1.20 100.0 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 479.96 13.91 3.30 48.83 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 483.00 14.00 3.32 100.0 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 88.00 2.55 0.61 68.22 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 499.33 14.47 3.44 50.8 SNORD82-201 snoRNA A375 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 159.00 95.21 1.09 98.76 MIR146B-201 miRNA A375 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 3.00 8.57 0.02 100.0 SNHG20-201 lncRNA A375 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 8.00 3.86 0.06 100.0 ATP5MK-205 protein coding A375 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 36.00 17.39 0.25 100.0 ATP5MK-205 protein coding A375 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 1.00 0.86 0.01 100.0 LINC01556-201 lncRNA A375 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 39.00 62.90 0.27 100.0 ATAD3A-202 protein coding A375 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 29.00 35.80 0.20 50.88 TMC5-202 protein coding A375 (Cell line)