ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 2540.15 2.80 17.48 36.24 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 2124.16 2.34 14.62 35.73 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 157.00 0.17 1.08 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 4351.00 4.80 29.94 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 159.00 25.44 1.09 100.0 Y_RNA.234-201 misc RNA A375 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 342.00 0.25 2.35 100.0 RNA5S9-201 rRNA A375 (Cell line)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNORD115-23-201 snoRNA A375 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 6122.00 5.91 42.13 100.0 RNA5SP141-201 rRNA pseudogene A375 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 145.00 80.11 1.00 100.0 ENST00000364722 snoRNA A375 (Cell line)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 1.00 50.00 0.01 100.0 SNORD115-15-201 snoRNA A375 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 847.00 74.30 5.83 100.0 SNORD52-201 snoRNA A375 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 1206.00 61.66 8.30 73.27 SNORD117-201 snoRNA A375 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 440.00 22.49 3.03 28.39 SNORD117-201 snoRNA A375 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 4.00 100.00 0.03 100.0 SNORD114-3-201 snoRNA A375 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 4.00 0.10 0.03 100.0 RNA5SP298-201 rRNA pseudogene A375 (Cell line)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 2.00 66.67 0.01 100.0 SNORD115-10-201 snoRNA A375 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 6994.00 90.55 48.13 100.0 SNORD38A-201 snoRNA A375 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 55.00 0.71 0.38 100.0 SNORD38A-201 snoRNA A375 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 479.00 6.20 3.30 100.0 SNORD38A-201 snoRNA A375 (Cell line)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 5.00 100.00 0.03 100.0 SNORD114-20-201 snoRNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 531.00 9.14 3.65 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 164.00 2.82 1.13 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 32.00 0.55 0.22 48.48 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 25.00 0.43 0.17 100.0 7SK.1-201 misc RNA A375 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 372.00 6.41 2.56 87.74 7SK.1-201 misc RNA A375 (Cell line)