ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 141.00 5.37 0.97 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 581.00 22.13 4.00 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 176.00 6.70 1.21 57.14 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 145.00 5.52 1.00 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 6.00 100.00 0.04 100.0 SNORD115-18-201 snoRNA A375 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 466.00 59.74 3.21 95.88 RNY4P27-201 misc RNA A375 (Cell line)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 43.00 5.51 0.30 68.25 RNY4P27-201 misc RNA A375 (Cell line)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 5.00 1.60 0.03 100.0 Y_RNA.136-201 misc RNA A375 (Cell line)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 3.00 100.00 0.02 100.0 SNORD115-41-201 snoRNA A375 (Cell line)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNORD115-5-201 snoRNA A375 (Cell line)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 2.00 100.00 0.01 100.0 SNORD115-33-201 snoRNA A375 (Cell line)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 13.00 65.00 0.09 81.25 SNORD114-25-201 snoRNA A375 (Cell line)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 1.00 50.00 0.01 100.0 SNORD113-7-201 snoRNA A375 (Cell line)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 4.00 20.00 0.03 100.0 Y_RNA.181-201 misc RNA A375 (Cell line)
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 1.00 100.00 0.01 100.0 SNORD115-16-201 snoRNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 16.00 1.73 0.11 100.0 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 179.00 19.31 1.23 100.0 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 47.72 5.15 0.33 76.96 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 5.78 0.62 0.04 18.08 RNY1-201 misc RNA A375 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 5.00 0.54 0.03 100.0 RNY1-201 misc RNA A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 4421.07 4.88 30.42 59.52 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 415.00 0.46 2.86 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 847.00 0.93 5.83 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 1030.00 1.14 7.09 100.0 RNA5SP202-201 rRNA pseudogene A375 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 2124.16 2.34 14.62 35.73 RNA5SP202-201 rRNA pseudogene A375 (Cell line)