ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 117.00 84.17 0.81 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 47.00 0.68 0.32 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 2.00 0.03 0.01 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 23.00 0.33 0.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 23.00 0.33 0.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 40.00 0.58 0.28 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 34.00 0.49 0.23 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 1824.00 21.05 12.55 98.7 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 20.00 0.23 0.14 83.33 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 4.00 0.05 0.03 30.77 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 96.00 18.50 0.66 59.26 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 11.00 100.00 0.08 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 3.00 12.50 0.02 100.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 7.00 87.50 0.05 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 164.00 3.41 1.13 87.7 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 23.00 0.48 0.16 12.3 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 2573.00 53.46 17.71 90.66 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 104.87 22.31 0.72 73.85 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 28.00 5.96 0.19 36.36 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 46.92 9.98 0.32 31.92 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 350.00 77.09 2.41 94.85 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 2.00 0.82 0.01 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 335.00 12.41 2.31 73.79 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 72.00 0.98 0.50 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 135.00 1.98 0.93 78.95 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA A375 (Cell line)