ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 3007.00 2.30 20.69 100.0 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 918.00 3.20 6.32 39.74 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 2901.00 10.11 19.96 79.68 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 1892.00 6.59 13.02 82.37 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 44.00 0.15 0.30 100.0 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 443.13 1.54 3.05 43.66 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 628.17 2.19 4.32 66.54 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 890.00 3.10 6.12 72.65 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 156.00 0.54 1.07 100.0 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 1915.00 6.67 13.18 74.95 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 736.00 2.57 5.06 47.27 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 657.20 2.29 4.52 11.06 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 611.00 2.13 4.20 55.7 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 157.00 0.55 1.08 100.0 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 1994.00 6.95 13.72 78.81 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 4253.10 14.82 29.27 42.74 RNU5A-1-201 snRNA A375 (Cell line)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 20.00 3.29 0.14 100.0 SNORD104-201 snoRNA A375 (Cell line)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 16.00 2.64 0.11 100.0 SNORD104-201 snoRNA A375 (Cell line)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 3.00 100.00 0.02 100.0 SNORD115-9-201 snoRNA A375 (Cell line)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 5158.00 43.39 35.49 85.1 RNA5SP358-201 rRNA pseudogene A375 (Cell line)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 18.00 0.01 0.12 81.82 RNA5SP145-201 rRNA pseudogene A375 (Cell line)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 4.00 16.00 0.03 100.0 Y_RNA.105-201 misc RNA A375 (Cell line)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 27.00 33.75 0.19 100.0 RNY4P9-201 misc RNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 581.00 22.13 4.00 100.0 RNU5B-1-201 snRNA A375 (Cell line)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 104.00 3.96 0.72 100.0 RNU5B-1-201 snRNA A375 (Cell line)