ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 335.00 25.95 2.31 100.0 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 68.00 5.27 0.47 36.17 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 42.00 3.25 0.29 25.93 ENST00000747675 lncRNA A375 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 9.00 15.00 0.06 100.0 SNHG26-250 lncRNA A375 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 19.00 31.67 0.13 67.86 SNHG26-250 lncRNA A375 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 30.00 10.71 0.21 100.0 LINC02422-207 lncRNA A375 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 20.00 2.86 0.14 100.0 ENST00000753088 lncRNA A375 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 12.00 1.72 0.08 100.0 ENST00000753088 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 69.21 4.89 0.48 64.08 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 98.00 6.93 0.67 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 64.00 4.53 0.44 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 23.00 1.63 0.16 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 59.83 4.23 0.41 20.99 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 253.78 17.95 1.75 86.03 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 25.24 1.79 0.17 24.51 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 34.56 2.44 0.24 38.4 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 53.00 3.75 0.36 100.0 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756336.1 ENST00000756336.1_109_172_+ 109–172 146.35 10.35 1.01 84.11 ENST00000756336 lncRNA A375 (Cell line)
ENST00000756452.1 ENST00000756452.1_116_129_+ 116–129 606.00 96.50 4.17 100.0 ENST00000756452 lncRNA A375 (Cell line)
ENST00000760093.1 ENST00000760093.1_80_108_+ 80–108 10.00 4.93 0.07 100.0 ENST00000760093 lncRNA A375 (Cell line)
ENST00000760093.1 ENST00000760093.1_77_108_+ 77–108 2.00 0.99 0.01 100.0 ENST00000760093 lncRNA A375 (Cell line)
ENST00000760397.1 ENST00000760397.1_331_421_+ 331–421 45677.00 96.73 314.32 97.68 SNHG14-356 lncRNA A375 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_354_+ 325–354 637.00 32.20 4.38 96.37 LINC02806-241 lncRNA A375 (Cell line)
ENST00000762395.1 ENST00000762395.1_325_377_+ 325–377 48.00 2.43 0.33 100.0 LINC02806-241 lncRNA A375 (Cell line)
ENST00000762395.1 ENST00000762395.1_324_357_+ 324–357 235.00 11.88 1.62 60.41 LINC02806-241 lncRNA A375 (Cell line)