ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 101.00 0.47 0.70 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 423.00 1.96 2.91 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 121.00 0.56 0.83 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 482.00 0.92 3.32 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 36.00 0.07 0.25 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 22.00 0.04 0.15 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3258.00 6.24 22.42 91.93 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 47692.00 91.37 328.19 100.0 SNHG32-223 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 19695.00 95.03 135.53 97.12 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 44.00 0.21 0.30 100.0 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 44.00 0.21 0.30 100.0 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 28.00 0.14 0.19 100.0 SNHG32-227 lncRNA A375 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 226.00 84.01 1.56 100.0 B4GALT1-203 nonsense mediated decay A375 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 9.00 2.42 0.06 100.0 ENST00000722183 lncRNA A375 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 76.00 20.43 0.52 69.72 ENST00000722183 lncRNA A375 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 42.00 11.29 0.29 100.0 ENST00000722183 lncRNA A375 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 743.00 37.30 5.11 45.69 THBS3-AS1-228 lncRNA A375 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 1.00 50.00 0.01 100.0 MIR200CHG-202 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 255.00 25.50 1.75 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 55.00 5.50 0.38 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 24.00 2.40 0.17 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 24.00 2.40 0.17 100.0 SNHG16-266 lncRNA A375 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 62.00 37.35 0.43 100.0 NR2F2-AS1-327 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 174.00 13.48 1.20 100.0 ENST00000747675 lncRNA A375 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 120.00 9.30 0.83 52.17 ENST00000747675 lncRNA A375 (Cell line)