ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 1.00 0.06 0.01 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 26.00 1.54 0.18 66.67 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 182.00 10.76 1.25 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 39.00 2.30 0.27 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 631.00 37.29 4.34 100.0 LINC02739-203 lncRNA A375 (Cell line)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 20.00 15.75 0.14 100.0 SNHG10-212 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 73041.73 84.01 502.63 87.27 SNHG19-202 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 11157.59 12.83 76.78 26.42 SNHG19-202 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3.73 0.00 0.03 93.24 SNHG19-202 lncRNA A375 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 0.72 0.00 0.00 36.02 SNHG19-202 lncRNA A375 (Cell line)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 4085.00 49.84 28.11 100.0 MIR222HG-206 lncRNA A375 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1859.00 22.68 12.79 60.34 MIR222HG-206 lncRNA A375 (Cell line)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 185.00 2.26 1.27 100.0 MIR222HG-206 lncRNA A375 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 16.00 11.43 0.11 100.0 RPSA-216 retained intron A375 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 11.00 2.07 0.08 100.0 MIR99AHG-370 lncRNA A375 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 507.00 95.30 3.49 99.8 MIR99AHG-370 lncRNA A375 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 605.00 98.37 4.16 100.0 HPS4-237 retained intron A375 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 72.00 11.61 0.50 100.0 DNAJC5-203 nonsense mediated decay A375 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 81.00 23.68 0.56 100.0 ENST00000707189 TEC A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 188.00 0.87 1.29 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 5819.00 26.95 40.04 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 10409.79 48.21 71.63 75.72 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 22.00 0.10 0.15 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 54.00 0.25 0.37 100.0 MIR17HG-214 lncRNA A375 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 3635.71 16.84 25.02 27.8 MIR17HG-214 lncRNA A375 (Cell line)