ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 2085.93 0.70 14.35 56.27 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 1444.00 0.49 9.94 69.72 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 7842.00 2.63 53.96 74.59 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 25884.00 8.70 178.12 98.59 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 3281.00 1.10 22.58 31.57 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 20351.00 6.84 140.04 88.32 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 11676.00 3.92 80.35 100.0 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 3597.00 1.21 24.75 100.0 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 294.00 0.10 2.02 11.23 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 10.00 0.00 0.07 100.0 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 1839.89 0.62 12.66 49.47 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 157.00 0.05 1.08 73.36 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 1383.95 0.46 9.52 56.08 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 239.00 0.08 1.64 80.74 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 3135.43 1.05 21.58 66.36 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 5141.00 1.73 35.38 57.39 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 25720.00 8.64 176.99 98.58 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 3513.00 1.18 24.17 71.39 RNA5S12-201 rRNA A375 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 16.00 34.78 0.11 100.0 Y_RNA.14-201 misc RNA A375 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 120.00 4.09 0.83 100.0 RNU5E-1-201 snRNA A375 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 7113.00 5.45 48.95 68.44 RNA5SP370-201 rRNA pseudogene A375 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 3.00 1.42 0.02 100.0 SNORA31-201 snoRNA A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 1381.00 1.06 9.50 100.0 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 10267.00 7.87 70.65 73.86 RNA5SP389-201 rRNA pseudogene A375 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 3007.00 2.30 20.69 100.0 RNA5SP389-201 rRNA pseudogene A375 (Cell line)