ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 175.00 0.18 1.20 100.0 RBMX-210 retained intron A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 225.00 0.23 1.55 100.0 RBMX-210 retained intron A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 130.00 0.14 0.89 100.0 RBMX-210 retained intron A375 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 92303.00 96.01 635.18 98.85 RBMX-210 retained intron A375 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 966.00 54.15 6.65 100.0 RPL4-214 retained intron A375 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 248.00 13.90 1.71 100.0 RPL4-214 retained intron A375 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 307.32 27.29 2.11 47.43 POLG-DT-202 lncRNA A375 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 467.30 41.50 3.22 80.57 POLG-DT-202 lncRNA A375 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 43.00 3.82 0.30 100.0 POLG-DT-202 lncRNA A375 (Cell line)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 12.00 1.74 0.08 100.0 ENST00000570843 lncRNA A375 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 60.00 8.72 0.41 100.0 ENST00000570843 lncRNA A375 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 6.00 54.55 0.04 100.0 MIR497HG-207 lncRNA A375 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 4604.00 99.40 31.68 99.52 MIR22HG-212 lncRNA A375 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 59.00 0.45 0.41 85.51 SNORD53B-201 snoRNA A375 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 10.00 0.08 0.07 14.49 SNORD53B-201 snoRNA A375 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 8702.00 66.83 59.88 67.68 SNORD53B-201 snoRNA A375 (Cell line)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 733.00 97.60 5.04 100.0 ENST00000578036 lncRNA A375 (Cell line)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3761.00 93.28 25.88 100.0 RPL23A-207 protein coding A375 (Cell line)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 46.00 90.20 0.32 100.0 MIR744-201 miRNA A375 (Cell line)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 13.00 61.90 0.09 100.0 MIR378C-201 miRNA A375 (Cell line)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 705.00 6.78 4.85 100.0 SNORD3C-201 snoRNA A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 231.12 0.07 1.59 58.36 RPL23A-208 retained intron A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 155.85 0.05 1.07 52.12 RPL23A-208 retained intron A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 173102.00 50.60 1191.19 67.65 RPL23A-208 retained intron A375 (Cell line)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 167061.00 48.83 1149.62 90.2 RPL23A-208 retained intron A375 (Cell line)