ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 4472.00 1.95 30.77 100.0 TAF1D-215 retained intron A375 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 220049.00 95.83 1514.25 100.0 TAF1D-215 retained intron A375 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 51.00 0.99 0.35 100.0 HSPA8-215 retained intron A375 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 40.00 0.77 0.28 100.0 HSPA8-215 retained intron A375 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 4362.00 84.37 30.02 100.0 HSPA8-215 retained intron A375 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 255.00 25.37 1.75 100.0 RPS2-215 retained intron A375 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 7796.00 88.69 53.65 89.92 ENST00000548801 lncRNA A375 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 569.00 35.79 3.92 100.0 ENST00000554988 lncRNA A375 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 311.00 19.56 2.14 100.0 ENST00000554988 lncRNA A375 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 8.00 0.50 0.06 100.0 ENST00000554988 lncRNA A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 1022.00 23.20 7.03 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 177.00 4.02 1.22 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 2910.00 66.05 20.02 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 6.00 0.14 0.04 100.0 SNHG14-220 retained intron A375 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 201.00 98.05 1.38 100.0 TEKT4P2-201 transcribed unprocessed pseudogene A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 566.00 1.20 3.89 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 6.00 0.01 0.04 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 32.00 0.07 0.22 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 42669.00 90.18 293.62 97.59 RPL4-202 retained intron A375 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 438.00 0.93 3.01 100.0 RPL4-202 retained intron A375 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 156.00 6.63 1.07 100.0 ENST00000563103 lncRNA A375 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 89.00 0.93 0.61 100.0 RPL4-207 retained intron A375 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 8358.00 87.44 57.51 100.0 RPL4-207 retained intron A375 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 732.00 32.59 5.04 85.61 ENST00000565336 lncRNA A375 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 453.00 20.17 3.12 86.78 ENST00000565336 lncRNA A375 (Cell line)