ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362162.1 ENST00000362162.1_14_35_+ 14–35 36.00 16.44 0.25 100.0 MIR425-201 miRNA A375 (Cell line)
ENST00000362168.1 ENST00000362168.1_66_87_+ 66–87 35.00 59.32 0.24 100.0 MIR210-201 miRNA A375 (Cell line)
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 1171.00 96.22 8.06 97.75 MIR378A-201 miRNA A375 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 38.00 42.70 0.26 100.0 MIR361-201 miRNA A375 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 2.00 0.61 0.01 6.45 MIR101-2-201 miRNA A375 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 292.00 89.02 2.01 90.97 MIR101-2-201 miRNA A375 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 2567.00 98.65 17.66 99.38 MIR26A1-201 miRNA A375 (Cell line)
ENST00000362207.3 ENST00000362207.3_15_35_+ 15–35 2.00 66.67 0.01 100.0 MIR129-2-201 miRNA A375 (Cell line)
ENST00000362212.1 ENST00000362212.1_61_83_+ 61–83 1.00 100.00 0.01 100.0 MIR342-201 miRNA A375 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 921.00 92.47 6.34 96.14 MIR148A-201 miRNA A375 (Cell line)
ENST00000362215.3 ENST00000362215.3_6_27_+ 6–27 25.00 2.51 0.17 100.0 MIR148A-201 miRNA A375 (Cell line)
ENST00000362222.4 ENST00000362222.4_50_70_+ 50–70 3.00 100.00 0.02 100.0 MIR410-201 miRNA A375 (Cell line)
ENST00000362237.3 ENST00000362237.3_47_68_+ 47–68 4.00 100.00 0.03 100.0 MIR409-201 miRNA A375 (Cell line)
ENST00000362239.4 ENST00000362239.4_16_36_+ 16–36 5.00 83.33 0.03 100.0 MIR411-201 miRNA A375 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 310.00 97.18 2.13 98.1 MIR26B-201 miRNA A375 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 207.00 73.67 1.42 87.71 MIR148B-201 miRNA A375 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 628.00 97.21 4.32 99.68 MIRLET7G-201 miRNA A375 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 16.00 1.15 0.11 100.0 MIR30D-201 miRNA A375 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 1316.00 94.68 9.06 99.32 MIR30D-201 miRNA A375 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 10.00 0.72 0.07 52.63 MIR30D-201 miRNA A375 (Cell line)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 32.00 88.89 0.22 100.0 MIR126-201 miRNA A375 (Cell line)
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 2.00 5.56 0.01 100.0 MIR126-201 miRNA A375 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 34.00 73.91 0.23 100.0 MIR374A-201 miRNA A375 (Cell line)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 1349.00 87.43 9.28 100.0 MIR31-201 miRNA A375 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 25720.00 8.64 176.99 98.58 RNA5S12-201 rRNA A375 (Cell line)