ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 313.00 0.61 2.15 89.17 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 39211.00 76.21 269.83 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 132.00 0.26 0.91 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 20.00 0.04 0.14 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 12.00 0.02 0.08 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 2058.00 4.00 14.16 95.9 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 387.00 0.75 2.66 81.47 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 270.00 0.52 1.86 61.36 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 38.00 0.07 0.26 100.0 RNY4-201 misc RNA A375 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 1081.00 2.10 7.44 90.46 RNY4-201 misc RNA A375 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 250.00 78.37 1.72 90.91 MIR3142HG-201 lncRNA A375 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 4049.00 74.80 27.86 100.0 SNHG6-204 retained intron A375 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 588.00 13.00 4.05 100.0 MIR151A-201 miRNA A375 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 3492.00 77.21 24.03 90.02 MIR151A-201 miRNA A375 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 264.00 92.63 1.82 100.0 DENND3-221 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 162.00 0.03 1.11 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 8.00 0.00 0.06 66.67 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 5.00 0.00 0.03 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 14.00 0.00 0.10 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 2.00 0.00 0.01 40.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 660.00 0.14 4.54 68.68 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 3.00 0.00 0.02 60.0 WDR74-204 protein coding A375 (Cell line)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 386.00 0.08 2.66 100.0 WDR74-204 protein coding A375 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 36987.00 85.15 254.52 100.0 HSPA8-211 retained intron A375 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 9.00 4.19 0.06 100.0 SCARNA9-201 lncRNA A375 (Cell line)