ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.01 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 4.00 0.00 0.03 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 18548.00 98.40 127.64 100.0 RPS8-207 protein coding CDS not defined A375 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 375.00 34.92 2.58 100.0 RPL7A-206 protein coding CDS not defined A375 (Cell line)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 77.00 7.17 0.53 100.0 RPL7A-206 protein coding CDS not defined A375 (Cell line)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 49.00 4.56 0.34 100.0 RPL7A-206 protein coding CDS not defined A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 12.00 0.00 0.08 100.0 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 263.00 0.09 1.81 100.0 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 66.00 0.02 0.45 100.0 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 73544.00 25.91 506.09 99.34 RPL21-209 retained intron A375 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 207655.00 73.16 1428.96 97.28 RPL21-209 retained intron A375 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 9.00 81.82 0.06 100.0 GABRE-209 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 3.00 0.00 0.02 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 8.00 0.01 0.06 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 343.00 0.29 2.36 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 34563.00 29.03 237.84 95.29 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 130.00 0.11 0.89 14.41 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 64.00 0.05 0.44 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 78163.00 65.65 537.87 99.46 RPL13A-212 retained intron A375 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1047.00 0.88 7.20 100.0 RPL13A-212 retained intron A375 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 9000.00 65.35 61.93 70.91 RPL7A-207 protein coding CDS not defined A375 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 64.00 0.46 0.44 100.0 RPL7A-207 protein coding CDS not defined A375 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 12.00 0.09 0.08 100.0 RPL7A-207 protein coding CDS not defined A375 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 680.00 10.64 4.68 100.0 RN7SL2-201 misc RNA A375 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 269.00 4.21 1.85 35.82 RN7SL2-201 misc RNA A375 (Cell line)