ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 7767.00 90.32 53.45 92.38 SNORD124-201 snoRNA A375 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 10.00 0.87 0.07 100.0 SNHG12-201 retained intron A375 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 283.00 9.38 1.95 100.0 RPL3-212 retained intron A375 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1329.00 44.05 9.15 96.8 RPL3-212 retained intron A375 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 588.00 97.84 4.05 100.0 SMC1A-204 retained intron A375 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 108002.00 95.71 743.21 99.14 RABGGTB-208 protein coding CDS not defined A375 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 139.00 35.64 0.96 82.25 DDX39B-219 retained intron A375 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 7.00 1.79 0.05 100.0 DDX39B-219 retained intron A375 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 22.00 5.64 0.15 100.0 DDX39B-219 retained intron A375 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 1964.00 88.55 13.52 100.0 RPS8-206 protein coding CDS not defined A375 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 257.00 0.18 1.77 100.0 RPL13-207 retained intron A375 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 139876.00 98.83 962.55 99.92 RPL13-207 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 118.00 0.06 0.81 54.13 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 62945.00 30.30 433.15 84.43 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 231.00 0.11 1.59 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 138329.00 66.60 951.90 98.72 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 520.00 0.25 3.58 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 224.00 0.11 1.54 70.66 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 2.00 0.00 0.01 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 4.00 0.00 0.03 100.0 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 656.00 0.32 4.51 90.86 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 598.00 0.29 4.12 72.57 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 562.00 0.27 3.87 85.54 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 279.00 0.13 1.92 52.84 EIF4A2-219 retained intron A375 (Cell line)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 79.00 0.04 0.54 31.23 EIF4A2-219 retained intron A375 (Cell line)