ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 62.00 12.35 0.43 100.0 LINC01783-201 lncRNA A375 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 79.00 90.80 0.54 100.0 RPS7P15-201 processed pseudogene A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 1.00 0.22 0.01 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 13.00 2.81 0.09 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 36.00 7.79 0.25 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 13.00 2.81 0.09 100.0 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 225.00 48.70 1.55 91.84 SNORD62B-201 snoRNA A375 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 387.00 98.72 2.66 100.0 MRPL32-203 nonsense mediated decay A375 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 621.00 95.83 4.27 100.0 ENST00000436739 lncRNA A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 17.00 0.50 0.12 35.42 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 123.00 3.60 0.85 100.0 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 266.00 7.78 1.83 40.43 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 21.00 0.61 0.14 100.0 TMEM107-204 protein coding A375 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 14.00 0.41 0.10 100.0 TMEM107-204 protein coding A375 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3167.00 38.54 21.79 70.58 SNHG16-201 lncRNA A375 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 3791.00 46.13 26.09 100.0 SNHG16-201 lncRNA A375 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 159537.00 97.31 1097.84 98.63 SNORD105B-201 snoRNA A375 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 274.00 74.46 1.89 95.14 SNORD121B-201 snoRNA A375 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1.00 0.00 0.01 100.0 SNORD127-201 snoRNA A375 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 24451.00 94.21 168.26 99.67 SNORD127-201 snoRNA A375 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 12784.00 89.23 87.97 100.0 SNORD42B-201 snoRNA A375 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 64.00 17.16 0.44 100.0 RNY4P25-201 misc RNA A375 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 447.00 60.98 3.08 100.0 SNORD121A-201 snoRNA A375 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 3079.00 38.97 21.19 72.96 SNORD126-201 snoRNA A375 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 4641.00 58.75 31.94 86.59 SNORD126-201 snoRNA A375 (Cell line)