ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 16.00 76.19 0.11 100.0 MIR887-201 miRNA A375 (Cell line)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 2.00 100.00 0.01 100.0 MIR889-201 miRNA A375 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 12936.00 85.55 89.02 100.0 SNORD111-201 snoRNA A375 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1989.00 51.95 13.69 70.04 SNORD88A-201 snoRNA A375 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 11.00 100.00 0.08 100.0 MIR548K-201 miRNA A375 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 25.00 64.10 0.17 100.0 MIR320B2-201 miRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 28.00 0.12 0.19 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 144.00 0.60 0.99 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 57.00 0.24 0.39 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 23283.00 96.98 160.22 100.0 SNORD100-201 snoRNA A375 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 162.00 27.14 1.11 100.0 SNORD111B-201 snoRNA A375 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 94.00 47.24 0.65 100.0 RNU2-36P-201 snRNA A375 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 6.00 3.02 0.04 100.0 RNU2-36P-201 snRNA A375 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 126.00 0.15 0.87 100.0 SNORD19C-201 snoRNA A375 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 77253.00 91.80 531.61 93.8 SNORD19C-201 snoRNA A375 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 224882.00 90.52 1547.51 94.2 SNORD12B-201 snoRNA A375 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 137.00 0.06 0.94 100.0 SNORD12B-201 snoRNA A375 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 4550.00 1.83 31.31 100.0 SNORD12B-201 snoRNA A375 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 21.00 28.38 0.14 100.0 Y_RNA.609-201 misc RNA A375 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 10.00 20.00 0.07 100.0 Y_RNA.612-201 misc RNA A375 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 526.00 2.45 3.62 100.0 SNORD71-201 snoRNA A375 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 15.00 0.07 0.10 100.0 SNORD71-201 snoRNA A375 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 20455.00 95.26 140.76 98.69 SNORD71-201 snoRNA A375 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 623.00 91.62 4.29 95.26 MIR194-2HG-201 lncRNA A375 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 52.00 7.65 0.36 47.71 MIR194-2HG-201 lncRNA A375 (Cell line)