ENCFF023EVA

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 13.00 3.90 0.09 100.0 MIR106B-201 miRNA A375 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 129.00 38.74 0.89 65.15 MIR106B-201 miRNA A375 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 39684.00 71.81 273.08 98.28 SNORD83A-201 snoRNA A375 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 13117.00 23.74 90.26 95.03 SNORD83A-201 snoRNA A375 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 5889.00 90.61 40.52 100.0 SNORD41-201 snoRNA A375 (Cell line)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 4.00 1.63 0.03 50.0 MT-TF-201 Mt tRNA A375 (Cell line)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 6.00 2.45 0.04 100.0 MT-TF-201 Mt tRNA A375 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 5.00 2.04 0.03 83.33 MT-TF-201 Mt tRNA A375 (Cell line)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 125.00 9.65 0.86 100.0 MT-TV-201 Mt tRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 65.00 1.56 0.45 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 225.00 5.39 1.55 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 52.00 1.25 0.36 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 101.00 2.42 0.70 95.28 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 101.00 2.42 0.70 100.0 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 84.00 2.01 0.58 83.17 MT-RNR2-201 Mt rRNA A375 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 441.00 5.44 3.03 87.67 MT-TI-201 Mt tRNA A375 (Cell line)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 2173.00 26.81 14.95 100.0 MT-TI-201 Mt tRNA A375 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_32_+ 1–32 590.60 17.90 4.06 55.09 MT-TQ-201 Mt tRNA A375 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_55_+ 1–55 33.00 1.00 0.23 100.0 MT-TQ-201 Mt tRNA A375 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_36_+ 1–36 637.00 19.31 4.38 77.78 MT-TQ-201 Mt tRNA A375 (Cell line)
ENST00000387372.1 ENST00000387372.1_1_30_+ 1–30 443.47 13.44 3.05 64.55 MT-TQ-201 Mt tRNA A375 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_51_+ 1–51 365.00 20.33 2.51 100.0 MT-TM-201 Mt tRNA A375 (Cell line)
ENST00000387377.1 ENST00000387377.1_1_31_+ 1–31 354.00 19.72 2.44 60.0 MT-TM-201 Mt tRNA A375 (Cell line)
ENST00000387405.1 ENST00000387405.1_1_24_+ 1–24 38.00 15.90 0.26 100.0 MT-TC-201 Mt tRNA A375 (Cell line)
ENST00000387409.1 ENST00000387409.1_1_65_+ 1–65 27872.00 80.52 191.80 100.0 MT-TY-201 Mt tRNA A375 (Cell line)