ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 31.00 96.88 0.22 100.0 MIR200B-201 miRNA Karpas-422 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 8292.00 94.16 57.79 97.34 MIR181B2-201 miRNA Karpas-422 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 97.00 92.38 0.68 95.1 MIR10B-201 miRNA Karpas-422 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 2323.81 39.83 16.19 52.71 MIR130B-201 miRNA Karpas-422 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 2290.37 39.26 15.96 46.74 MIR130B-201 miRNA Karpas-422 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 671.00 11.50 4.68 100.0 MIR130B-201 miRNA Karpas-422 (Cell line)
ENST00000385019.1 ENST00000385019.1_6_28_+ 6–28 1.00 1.96 0.01 100.0 MIR199A1-201 miRNA Karpas-422 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 6601.20 50.89 46.00 61.05 MIR93-201 miRNA Karpas-422 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 6058.67 46.71 42.22 47.96 MIR93-201 miRNA Karpas-422 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 609.00 84.00 4.24 88.65 MIR532-201 miRNA Karpas-422 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 742.00 86.89 5.17 100.0 MIR15B-201 miRNA Karpas-422 (Cell line)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 53.00 89.83 0.37 100.0 MIR150-201 miRNA Karpas-422 (Cell line)
ENST00000385050.3 ENST00000385050.3_53_74_+ 53–74 1.00 33.33 0.01 100.0 MIR542-201 miRNA Karpas-422 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 512.00 69.28 3.57 100.0 MIR500A-201 miRNA Karpas-422 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 45.00 6.09 0.31 100.0 MIR500A-201 miRNA Karpas-422 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 175.00 76.42 1.22 100.0 MIR30A-201 miRNA Karpas-422 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_25_+ 6–25 1.00 0.44 0.01 50.0 MIR30A-201 miRNA Karpas-422 (Cell line)
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 42.00 18.34 0.29 97.67 MIR30A-201 miRNA Karpas-422 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 39586.00 94.62 275.87 95.58 MIR27B-201 miRNA Karpas-422 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 221.00 0.53 1.54 100.0 MIR27B-201 miRNA Karpas-422 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 2.00 66.67 0.01 100.0 MIR196A2-201 miRNA Karpas-422 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 2.00 50.00 0.01 100.0 MIR577-201 miRNA Karpas-422 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 7.00 58.33 0.05 100.0 MIR152-201 miRNA Karpas-422 (Cell line)
ENST00000385219.1 ENST00000385219.1_23_45_+ 23–45 212.00 65.84 1.48 100.0 MIR138-1-201 miRNA Karpas-422 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 5527.00 95.01 38.52 100.0 MIR30C1-201 miRNA Karpas-422 (Cell line)