ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 63.00 2.03 0.44 14.82 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 362.00 11.67 2.52 92.35 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 527.00 15.66 3.67 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 38953.00 21.96 271.46 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 59321.00 33.45 413.40 76.25 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 42.00 4.57 0.29 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 111.00 7.79 0.77 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 84.00 0.26 0.59 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 7839.00 13.59 54.63 86.54 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 708.00 1.23 4.93 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 2294.00 3.98 15.99 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 372.00 0.65 2.59 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 3352.00 5.81 23.36 58.75 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 2785.00 4.83 19.41 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 595.00 7.18 4.15 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 1769.00 21.35 12.33 63.47 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 288.00 3.68 2.01 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 11045.00 54.10 76.97 93.63 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 7.00 0.03 0.05 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 19.00 0.09 0.13 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 218.00 1.07 1.52 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 1379.00 6.75 9.61 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 159.00 2.12 1.11 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 11348.00 28.36 79.08 44.84 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 36.00 0.51 0.25 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA Karpas-422 (Cell line)