ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 4060.00 90.93 28.29 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 17.00 0.38 0.12 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 90.00 5.75 0.63 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 8.00 0.49 0.06 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 1490.00 43.66 10.38 83.99 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 1298.00 3.21 9.05 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 678.00 11.70 4.72 89.92 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 113.00 1.95 0.79 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 407.00 7.02 2.84 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 1701.00 48.31 11.85 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 13849.00 6.91 96.51 43.4 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 7608.00 3.79 53.02 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 1621.00 0.81 11.30 93.43 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 68.00 0.03 0.47 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 347.00 0.17 2.42 86.1 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_72_+ 1–72 17095.00 8.53 119.13 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 128.00 0.06 0.89 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 51.00 4.20 0.36 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 261.00 0.07 1.82 95.26 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 2399.00 64.68 16.72 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 25.00 0.67 0.17 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 676.00 31.69 4.71 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 522.00 6.98 3.64 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 16.00 0.00 0.11 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA Karpas-422 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 1371.00 0.39 9.55 16.03 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA Karpas-422 (Cell line)