ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 13.00 1.64 0.09 100.0 MIR200CHG-202 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 117.00 2.23 0.82 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 734.00 13.98 5.12 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 180.00 3.43 1.25 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 80.00 1.52 0.56 100.0 SNHG16-266 lncRNA Karpas-422 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 258.00 45.03 1.80 100.0 NR2F2-AS1-327 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 525.00 4.29 3.66 40.17 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 2507.00 20.47 17.47 100.0 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 404.00 3.30 2.82 43.49 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 378.00 3.09 2.63 41.86 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000747675.1 ENST00000747675.1_812_853_+ 812–853 5783.00 47.23 40.30 100.0 ENST00000747675 lncRNA Karpas-422 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_188_+ 161–188 30589.00 47.34 213.17 79.19 SNHG26-250 lncRNA Karpas-422 (Cell line)
ENST00000748458.1 ENST00000748458.1_161_230_+ 161–230 277.00 0.43 1.93 7.07 SNHG26-250 lncRNA Karpas-422 (Cell line)
ENST00000752259.1 ENST00000752259.1_405_425_+ 405–425 346.00 8.57 2.41 100.0 LINC02422-207 lncRNA Karpas-422 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_523_+ 508–523 120.00 3.32 0.84 100.0 ENST00000753088 lncRNA Karpas-422 (Cell line)
ENST00000753088.1 ENST00000753088.1_508_542_+ 508–542 48.00 1.33 0.33 100.0 ENST00000753088 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_127_+ 98–127 1246.61 5.66 8.69 65.34 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_133_172_+ 133–172 739.00 3.35 5.15 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_117_172_+ 117–172 1335.00 6.06 9.30 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_137_172_+ 137–172 439.00 1.99 3.06 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_132_+ 98–132 525.93 2.39 3.67 21.03 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_130_+ 98–130 2377.01 10.79 16.56 85.63 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_107_172_+ 107–172 563.71 2.56 3.93 27.27 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_125_+ 98–125 576.04 2.61 4.01 39.7 ENST00000756336 lncRNA Karpas-422 (Cell line)
ENST00000756336.1 ENST00000756336.1_98_172_+ 98–172 4899.00 22.23 34.14 100.0 ENST00000756336 lncRNA Karpas-422 (Cell line)