ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 458.00 1.88 3.19 100.0 TMEM107-204 protein coding Karpas-422 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 292.00 19.45 2.03 100.0 SNHG16-201 lncRNA Karpas-422 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 267.00 17.79 1.86 69.53 SNHG16-201 lncRNA Karpas-422 (Cell line)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 2.00 4.44 0.01 100.0 SNHG14-207 lncRNA Karpas-422 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 31717.00 95.76 221.03 98.22 SNORD105B-201 snoRNA Karpas-422 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3843.00 71.56 26.78 96.27 SNORD121B-201 snoRNA Karpas-422 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 38235.00 92.21 266.45 99.43 SNORD127-201 snoRNA Karpas-422 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 83.00 0.20 0.58 100.0 SNORD127-201 snoRNA Karpas-422 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 15134.00 80.63 105.47 100.0 SNORD42B-201 snoRNA Karpas-422 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 13968.00 41.87 97.34 100.0 RNY4P25-201 misc RNA Karpas-422 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 439.00 51.11 3.06 100.0 SNORD121A-201 snoRNA Karpas-422 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1360.00 23.96 9.48 48.52 SNORD126-201 snoRNA Karpas-422 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 3161.00 55.70 22.03 82.9 SNORD126-201 snoRNA Karpas-422 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 20762.00 89.10 144.69 93.9 SNORD124-201 snoRNA Karpas-422 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 54.00 3.75 0.38 100.0 SNHG12-201 retained intron Karpas-422 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 1259.00 32.08 8.77 91.1 RPL3-212 retained intron Karpas-422 (Cell line)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 715.00 18.22 4.98 100.0 RPL3-212 retained intron Karpas-422 (Cell line)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 17758.00 97.79 123.75 100.0 SMC1A-204 retained intron Karpas-422 (Cell line)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 99541.00 91.23 693.68 99.75 RABGGTB-208 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 118.00 3.95 0.82 85.51 DDX39B-219 retained intron Karpas-422 (Cell line)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 321.00 10.75 2.24 100.0 DDX39B-219 retained intron Karpas-422 (Cell line)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 507.00 16.98 3.53 100.0 DDX39B-219 retained intron Karpas-422 (Cell line)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 5245.00 71.63 36.55 100.0 RPS8-206 protein coding CDS not defined Karpas-422 (Cell line)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 9854.00 71.17 68.67 99.83 RPL13-207 retained intron Karpas-422 (Cell line)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 414.00 2.99 2.89 100.0 RPL13-207 retained intron Karpas-422 (Cell line)