ENCFF004YAN

Library Details

Organism: Homo Sapiens
Biosample: Karpas-422 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR905KHW
Description: Part of ENCODE experiment ENCSR905KHW. The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 575.00 70.73 4.01 100.0 SNORD70B-201 snoRNA Karpas-422 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 9743.00 30.45 67.90 86.87 RNY4P18-201 misc RNA Karpas-422 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 13557.00 33.42 94.48 100.0 SNORD90-201 snoRNA Karpas-422 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 20938.00 51.61 145.91 85.86 SNORD90-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 986.00 4.81 6.87 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 193.00 0.94 1.34 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 16835.00 82.18 117.32 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 532.00 2.60 3.71 100.0 SNORD69-201 snoRNA Karpas-422 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 2262.00 65.04 15.76 89.98 SNORD70-201 snoRNA Karpas-422 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 19749.00 74.16 137.63 83.06 B4GALNT2-202 protein coding Karpas-422 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 977.00 3.67 6.81 100.0 B4GALNT2-202 protein coding Karpas-422 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 694.00 87.85 4.84 100.0 NDE1-202 protein coding Karpas-422 (Cell line)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 2.00 100.00 0.01 100.0 MIR208B-201 miRNA Karpas-422 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 15.00 71.43 0.10 100.0 MIR450B-201 miRNA Karpas-422 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 1946.00 49.52 13.56 100.0 SNORD111-201 snoRNA Karpas-422 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 2886.00 38.30 20.11 65.03 SNORD88A-201 snoRNA Karpas-422 (Cell line)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 441.00 94.64 3.07 100.0 MIR548K-201 miRNA Karpas-422 (Cell line)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 45.00 54.88 0.31 100.0 MIR320B2-201 miRNA Karpas-422 (Cell line)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 80.00 86.96 0.56 100.0 MIR1271-201 miRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 5.00 0.02 0.03 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 23898.00 92.37 166.54 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 472.00 1.82 3.29 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 235.00 0.91 1.64 100.0 SNORD100-201 snoRNA Karpas-422 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 879.00 49.60 6.13 100.0 SNORD111B-201 snoRNA Karpas-422 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 24.00 0.66 0.17 100.0 RNU2-36P-201 snRNA Karpas-422 (Cell line)