ENCFF000JFN

Library Details

Organism: Homo Sapiens
Biosample: articular chondrocyte of knee joint (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVB
Description: Part of ENCODE experiment ENCSR000CVB. The libraries contained in this experiment come from knee joint chondrocytes primary whole cells, HCH isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1533.00 66.83 131.49 100.0 ENST00000651540 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 15249.00 5.45 1307.98 98.51 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 243604.00 87.00 20895.10 95.04 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1246.00 0.45 106.88 100.0 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.09 100.0 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 1066.00 0.38 91.44 100.0 SNHG29-232 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 6.00 2.71 0.51 100.0 SNHG14-234 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1523.00 14.04 130.64 100.0 SNHG1-248 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2603.00 23.99 223.27 100.0 SNHG1-248 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 3644.00 33.59 312.56 100.0 SNHG1-248 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 1261.00 2.42 108.16 100.0 SNHG5-273 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 16888.00 32.38 1448.57 85.63 SNHG5-273 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 24572.00 47.12 2107.66 92.28 SNHG5-273 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 569.00 83.92 48.81 100.0 SNHG14-336 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 511.00 66.11 43.83 100.0 NCL-216 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 6434.27 49.00 551.90 70.19 SNHG19-202 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 2790.39 21.25 239.35 34.41 SNHG19-202 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 317.00 38.29 27.19 100.0 SNHG8-214 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 4059.00 77.58 348.16 100.0 ENST00000722183 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 3684.00 86.30 315.99 100.0 ENST00000747512 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 7039.00 90.45 603.77 100.0 ENST00000772672 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 5.00 0.24 0.43 100.0 ENST00000823279 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 60.00 2.89 5.15 10.58 ENST00000823279 lncRNA articular chondrocyte of knee joint (Primary cell)