ENCFF000JFN

Library Details

Organism: Homo Sapiens
Biosample: articular chondrocyte of knee joint (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVB
Description: Part of ENCODE experiment ENCSR000CVB. The libraries contained in this experiment come from knee joint chondrocytes primary whole cells, HCH isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000527983.5 ENST00000527983.5_1314_1406_+ 1314–1406 1679.00 57.32 144.02 73.13 HSPA8-211 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000531908.5 ENST00000531908.5_147_241_+ 147–241 2112.00 79.34 181.16 100.0 RPS13-208 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 5242.00 70.11 449.63 100.0 HSPA8-215 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2.00 0.03 0.17 100.0 HSPA8-215 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1.00 0.14 0.09 100.0 RPS2-215 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000567229.5 ENST00000567229.5_479_567_+ 479–567 1914.00 75.15 164.17 100.0 RPL4-214 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_85_+ 1–85 4362.00 35.31 374.15 100.0 ENST00000570843 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000570843.1 ENST00000570843.1_1_80_+ 1–80 4731.00 38.29 405.80 100.0 ENST00000570843 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 1450.00 45.44 124.37 100.0 C19orf48P-203 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 308.00 24.50 26.42 100.0 RPS11-206 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 1.00 0.16 0.09 100.0 ENST00000602478 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000612233.1 ENST00000612233.1_681_767_+ 681–767 392.00 43.75 33.62 100.0 NOP56-219 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 8.00 11.27 0.69 100.0 RNA5-8SN2-201 rRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 92.17 1.45 7.91 38.89 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 2468.00 38.71 211.69 100.0 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 17.00 0.27 1.46 100.0 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 132.17 2.07 11.34 55.77 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 3.48 0.05 0.30 19.32 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 10.09 0.16 0.87 59.36 U2.3-201 snRNA articular chondrocyte of knee joint (Primary cell)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 15.00 3.59 1.29 100.0 SNHG14-224 lncRNA articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1.00 0.00 0.09 50.0 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1732_+ 1641–1732 371.00 0.12 31.82 100.0 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_358_438_+ 358–438 183837.00 61.07 15768.59 96.0 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 2044.00 0.68 175.32 100.0 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 41617.00 13.83 3569.69 74.79 GAS5-230 retained intron articular chondrocyte of knee joint (Primary cell)