ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 1.00 1.59 0.00 100.0 SNORD114-3-201 snoRNA GM23338 (Cell line)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 24050.00 44.59 28.86 100.0 RNA5SP298-201 rRNA pseudogene GM23338 (Cell line)
ENST00000365037.1 ENST00000365037.1_2_82_+ 2–82 13.00 39.39 0.02 100.0 SNORD115-38-201 snoRNA GM23338 (Cell line)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 6.00 20.69 0.01 100.0 SNORD115-10-201 snoRNA GM23338 (Cell line)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 1.00 50.00 0.00 100.0 SNORD115-20-201 snoRNA GM23338 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 7204.00 75.86 8.65 100.0 SNORD38A-201 snoRNA GM23338 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 1515.00 15.95 1.82 100.0 SNORD38A-201 snoRNA GM23338 (Cell line)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 156.00 1.64 0.19 100.0 SNORD38A-201 snoRNA GM23338 (Cell line)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 5.00 62.50 0.01 100.0 SNORD114-20-201 snoRNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 1050.00 2.43 1.26 72.36 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 21.00 0.05 0.03 100.0 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 598.00 1.38 0.72 44.04 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 14251.00 33.00 17.10 100.0 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 899.00 2.08 1.08 31.82 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 932.00 2.16 1.12 100.0 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 837.00 1.94 1.00 67.61 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 476.00 1.10 0.57 100.0 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 245.00 0.57 0.29 100.0 7SK.1-201 misc RNA GM23338 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 63.00 33.87 0.08 100.0 SNORD14C-201 snoRNA GM23338 (Cell line)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 7.00 25.93 0.01 100.0 SNORD115-44-201 snoRNA GM23338 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 787.00 58.56 0.94 100.0 RNA5SP77-201 rRNA pseudogene GM23338 (Cell line)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 2.00 28.57 0.00 100.0 SNORD114-22-201 snoRNA GM23338 (Cell line)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 3.00 42.86 0.00 100.0 SNORD114-22-201 snoRNA GM23338 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 50566.00 87.61 60.68 100.0 SNORD6-201 snoRNA GM23338 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 213.00 0.37 0.26 100.0 SNORD6-201 snoRNA GM23338 (Cell line)