ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 498.22 4.29 0.60 36.8 RNY1-201 misc RNA GM23338 (Cell line)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 580.00 4.99 0.70 100.0 RNY1-201 misc RNA GM23338 (Cell line)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 17.00 0.15 0.02 100.0 RNY1-201 misc RNA GM23338 (Cell line)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 5.00 16.67 0.01 100.0 SNORD115-42-201 snoRNA GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 1884.00 4.03 2.26 100.0 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 19.00 0.04 0.02 100.0 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 2024.83 4.34 2.43 15.49 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 177.00 0.38 0.21 100.0 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 38.00 0.08 0.05 100.0 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 194.35 0.42 0.23 49.45 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 8.00 0.02 0.01 100.0 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 76.00 0.16 0.09 100.0 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 166.70 0.36 0.20 45.92 RNA5SP202-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1.00 25.00 0.00 100.0 SNORD114-9-201 snoRNA GM23338 (Cell line)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 1991.00 42.42 2.39 100.0 Y_RNA.234-201 misc RNA GM23338 (Cell line)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 8.00 0.00 0.01 100.0 RNA5S9-201 rRNA GM23338 (Cell line)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 14.00 93.33 0.02 100.0 SNORD115-23-201 snoRNA GM23338 (Cell line)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 114.00 0.03 0.14 100.0 RNA5SP141-201 rRNA pseudogene GM23338 (Cell line)
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 631.00 70.90 0.76 100.0 ENST00000364722 snoRNA GM23338 (Cell line)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 1.00 3.57 0.00 100.0 SNORD115-15-201 snoRNA GM23338 (Cell line)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 1454.00 61.09 1.74 100.0 SNORD52-201 snoRNA GM23338 (Cell line)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 1053.00 25.69 1.26 40.53 SNORD117-201 snoRNA GM23338 (Cell line)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 1545.00 37.69 1.85 61.21 SNORD117-201 snoRNA GM23338 (Cell line)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 1.00 1.59 0.00 100.0 SNORD114-3-201 snoRNA GM23338 (Cell line)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 42.00 66.67 0.05 93.33 SNORD114-3-201 snoRNA GM23338 (Cell line)