ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 453.00 9.06 0.54 49.83 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 1739.13 34.78 2.09 93.0 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 179.41 3.59 0.22 10.45 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 1949.00 61.54 2.34 93.48 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 4.00 0.03 0.00 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 1202.00 6.84 1.44 71.25 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 1110.00 3.63 1.33 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 1208.00 1.25 1.45 89.55 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 973.00 58.30 1.17 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 1664.00 13.84 2.00 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 24316.00 66.07 29.18 96.4 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 169.00 0.05 0.20 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 317215.00 87.05 380.68 98.82 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 25.00 6.89 0.03 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 16178.00 92.58 19.41 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 34.00 0.86 0.04 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 4295.00 63.11 5.15 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 128.00 16.28 0.15 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 74670.00 59.75 89.61 87.08 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 581.00 0.46 0.70 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 578.00 1.89 0.69 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 2251.00 58.67 2.70 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 577.00 6.64 0.69 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 379.00 5.55 0.45 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 1349.00 19.77 1.62 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA GM23338 (Cell line)