ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 73628.00 34.49 88.36 100.0 GAS5-377 lncRNA GM23338 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 99.00 0.05 0.12 100.0 GAS5-377 lncRNA GM23338 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 274.00 0.13 0.33 100.0 GAS5-377 lncRNA GM23338 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 134304.00 62.92 161.17 100.0 GAS5-377 lncRNA GM23338 (Cell line)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 869.00 94.15 1.04 100.0 MIR205HG-245 lncRNA GM23338 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 27858.00 69.95 33.43 100.0 TAF12-DT-204 lncRNA GM23338 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 669206.00 93.08 803.08 99.88 ZFAS1-238 lncRNA GM23338 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 457.00 0.06 0.55 100.0 ZFAS1-238 lncRNA GM23338 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 600.00 0.08 0.72 100.0 ZFAS1-238 lncRNA GM23338 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2092.00 0.29 2.51 100.0 ZFAS1-238 lncRNA GM23338 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 1586.00 0.50 1.90 100.0 ZFAS1-242 lncRNA GM23338 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 305265.00 97.19 366.33 100.0 ZFAS1-242 lncRNA GM23338 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 771.00 45.11 0.93 100.0 ENST00000837997 lncRNA GM23338 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 517.00 30.25 0.62 100.0 ENST00000837997 lncRNA GM23338 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 1429.00 70.78 1.71 81.66 ENST00000839036 lncRNA GM23338 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 83251.00 78.76 99.91 100.0 ENST00000849527 lncRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 566.00 3.63 0.68 83.85 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 8066.00 51.68 9.68 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 940.00 2.55 1.13 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 3090.00 77.50 3.71 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 43.00 1.08 0.05 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 2247.00 49.93 2.70 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 5363.00 32.52 6.44 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 649.00 11.40 0.78 77.45 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA GM23338 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 1438.00 3.91 1.73 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA GM23338 (Cell line)