ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 115.00 0.08 0.14 100.0 SNHG32-223 lncRNA GM23338 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 104.00 0.07 0.12 100.0 SNHG32-223 lncRNA GM23338 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 4488.00 2.96 5.39 95.82 SNHG32-223 lncRNA GM23338 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 139356.00 91.90 167.23 100.0 SNHG32-223 lncRNA GM23338 (Cell line)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 63356.00 92.51 76.03 95.19 SNHG32-227 lncRNA GM23338 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 219.00 0.32 0.26 100.0 SNHG32-227 lncRNA GM23338 (Cell line)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 71.00 0.10 0.09 100.0 SNHG32-227 lncRNA GM23338 (Cell line)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 61.00 0.09 0.07 100.0 SNHG32-227 lncRNA GM23338 (Cell line)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 2936.00 75.51 3.52 100.0 B4GALT1-203 nonsense mediated decay GM23338 (Cell line)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 241.00 1.53 0.29 100.0 ENST00000722183 lncRNA GM23338 (Cell line)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 2131.00 13.54 2.56 87.73 ENST00000722183 lncRNA GM23338 (Cell line)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1698.00 10.79 2.04 100.0 ENST00000722183 lncRNA GM23338 (Cell line)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 189.00 74.41 0.23 100.0 MIR34BHG-202 lncRNA GM23338 (Cell line)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 32544.00 73.81 39.05 79.08 THBS3-AS1-228 lncRNA GM23338 (Cell line)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 373.00 35.52 0.45 100.0 MIR200CHG-202 lncRNA GM23338 (Cell line)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 310.00 29.52 0.37 100.0 MIR200CHG-202 lncRNA GM23338 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 442.00 12.95 0.53 100.0 SNHG16-266 lncRNA GM23338 (Cell line)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 171.00 5.01 0.21 100.0 SNHG16-266 lncRNA GM23338 (Cell line)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 66.00 1.93 0.08 100.0 SNHG16-266 lncRNA GM23338 (Cell line)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 79.00 2.31 0.09 100.0 SNHG16-266 lncRNA GM23338 (Cell line)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 322.00 35.15 0.39 100.0 NR2F2-AS1-327 lncRNA GM23338 (Cell line)
ENST00000747675.1 ENST00000747675.1_804_853_+ 804–853 2729.00 1.95 3.27 48.11 ENST00000747675 lncRNA GM23338 (Cell line)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 2944.00 2.11 3.53 39.33 ENST00000747675 lncRNA GM23338 (Cell line)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 29950.00 21.43 35.94 100.0 ENST00000747675 lncRNA GM23338 (Cell line)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 1812.00 1.30 2.17 38.1 ENST00000747675 lncRNA GM23338 (Cell line)