ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 52.00 8.43 0.06 100.0 MIR126-201 miRNA GM23338 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 104.00 49.06 0.12 100.0 MIR374A-201 miRNA GM23338 (Cell line)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 789.00 86.51 0.95 100.0 MIR31-201 miRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 331.00 0.09 0.40 72.43 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 741.00 0.20 0.89 99.46 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 283.00 0.07 0.34 94.02 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 688.00 0.18 0.83 96.77 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 72.00 0.02 0.09 100.0 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 8.00 0.00 0.01 10.81 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 97210.00 25.71 116.66 100.0 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 63.87 0.02 0.08 51.93 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 66.00 0.02 0.08 100.0 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_56_95_+ 56–95 78.35 0.02 0.09 57.61 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_32_95_+ 32–95 133.00 0.04 0.16 87.5 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 1374.00 0.36 1.65 99.71 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 225.00 0.06 0.27 58.9 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_32_+ 1–32 145.00 0.04 0.17 85.29 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_58_95_+ 58–95 40.06 0.01 0.05 50.07 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 105.06 0.03 0.13 70.04 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 9.00 0.00 0.01 100.0 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_12_95_+ 12–95 187.00 0.05 0.22 76.33 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362400.1 ENST00000362400.1_83_95_+ 83–95 953.00 0.25 1.14 100.0 RNA5S12-201 rRNA GM23338 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 230.00 11.32 0.28 100.0 Y_RNA.14-201 misc RNA GM23338 (Cell line)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 8.00 25.00 0.01 100.0 SNORD115-34-201 snoRNA GM23338 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 170.00 2.06 0.20 100.0 RNU5E-1-201 snRNA GM23338 (Cell line)