ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 10947.00 5.97 13.14 50.09 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 11205.01 68.44 13.45 87.02 5S_rRNA.20-201 rRNA pseudogene GM23338 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1915.00 5.40 2.30 100.0 HSPA9-211 retained intron GM23338 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 22755.00 64.16 27.31 93.36 HSPA9-211 retained intron GM23338 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 38.00 90.48 0.05 100.0 DNM3OS-205 lncRNA GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 297.00 0.00 0.36 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 10271.00 0.16 12.33 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 480.00 0.01 0.58 14.23 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 22405.00 0.34 26.89 99.78 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 1283.00 0.02 1.54 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 362.00 0.01 0.43 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 10624.00 0.16 12.75 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 4794430.00 73.72 5753.58 98.1 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1383.00 0.02 1.66 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 18475.00 0.28 22.17 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 11715.00 0.18 14.06 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 885.00 0.01 1.06 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 55671.00 0.86 66.81 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 113.00 0.00 0.14 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 150.00 0.00 0.18 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1369.00 0.02 1.64 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 1895.00 0.03 2.27 74.31 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 3043.00 0.05 3.65 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 71949.00 1.11 86.34 100.0 GAS5-230 retained intron GM23338 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 44128.00 0.68 52.96 99.67 GAS5-230 retained intron GM23338 (Cell line)