ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 72307.00 2.70 86.77 100.0 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 4137.00 0.15 4.96 100.0 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 61114.30 2.28 73.34 57.43 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 45964.59 1.71 55.16 48.33 U2.3-201 snRNA GM23338 (Cell line)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 454.00 0.02 0.54 100.0 U2.6-201 snRNA GM23338 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 10.00 12.66 0.01 100.0 ENST00000619323 lncRNA GM23338 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 178.00 22.65 0.21 100.0 SCARNA4-202 scaRNA GM23338 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 18.00 22.50 0.02 100.0 ENST00000625572 miRNA GM23338 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1307.00 55.78 1.57 100.0 ENST00000628177 snoRNA GM23338 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 72615.00 92.81 87.14 100.0 ENST00000630615 snoRNA GM23338 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 235.00 26.23 0.28 100.0 DMRT2-209 protein coding GM23338 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 150.00 16.74 0.18 100.0 DMRT2-209 protein coding GM23338 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 117.00 10.41 0.14 100.0 SNORD98-201 snoRNA GM23338 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 502.00 44.66 0.60 100.0 SNORD98-201 snoRNA GM23338 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 170030.63 54.27 204.05 57.48 MIR106AHG-201 lncRNA GM23338 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 1068.89 0.34 1.28 70.18 MIR106AHG-201 lncRNA GM23338 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 752.00 0.24 0.90 100.0 MIR106AHG-201 lncRNA GM23338 (Cell line)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 476.27 0.15 0.57 31.27 MIR106AHG-201 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 19388.00 10.57 23.27 95.78 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 63898.00 34.84 76.68 98.26 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 25198.00 13.74 30.24 100.0 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 21520.00 11.73 25.83 98.14 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 143.00 0.08 0.17 100.0 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 1337.00 0.73 1.60 22.15 SNHG14-224 lncRNA GM23338 (Cell line)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 14659.00 7.99 17.59 72.77 SNHG14-224 lncRNA GM23338 (Cell line)