ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000608502.2 ENST00000608502.2_858_879_+ 858–879 15.00 12.82 0.02 100.0 MIR219A2HG-201 lncRNA GM23338 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 4285.00 71.39 5.14 94.2 SNORD91A-201 snoRNA GM23338 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 3688.00 47.64 4.43 97.05 MIR486-1-201 miRNA GM23338 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 262.00 0.45 0.31 20.52 NOP56-219 retained intron GM23338 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 2772.00 4.80 3.33 100.0 NOP56-219 retained intron GM23338 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 1375.00 2.38 1.65 100.0 NOP56-219 retained intron GM23338 (Cell line)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 45247.00 78.40 54.30 99.54 NOP56-219 retained intron GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 612.00 1.54 0.73 67.7 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 9.03 0.02 0.01 69.46 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 63.00 0.16 0.08 100.0 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1568.00 3.94 1.88 100.0 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 128.00 0.32 0.15 100.0 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 382.00 0.96 0.46 38.43 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 2.58 0.01 0.00 19.82 RNA5-8SN2-201 rRNA GM23338 (Cell line)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 393.00 97.52 0.47 100.0 MIR7974-201 miRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 9599.00 0.36 11.52 100.0 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 7494.94 0.28 8.99 32.67 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 1354306.00 50.52 1625.24 99.16 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 60.00 0.00 0.07 100.0 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 223500.00 8.34 268.21 83.25 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 656690.00 24.50 788.06 96.93 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 21526.00 0.80 25.83 88.02 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 15562.07 0.58 18.68 67.84 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 1608.00 0.06 1.93 100.0 U2.3-201 snRNA GM23338 (Cell line)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 391.00 0.01 0.47 100.0 U2.3-201 snRNA GM23338 (Cell line)