ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 17.00 3.28 0.02 73.91 MIR23AHG-201 lncRNA GM23338 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 2344.00 80.97 2.81 100.0 ODAD3-204 nonsense mediated decay GM23338 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1226.00 8.57 1.47 100.0 VMP1-217 retained intron GM23338 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 219.00 1.53 0.26 100.0 VMP1-217 retained intron GM23338 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 10572.00 73.88 12.69 87.48 VMP1-217 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1517.00 0.07 1.82 100.0 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 515843.24 24.78 619.04 29.1 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 1476616.55 70.95 1772.02 73.23 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 40930.00 1.97 49.12 92.85 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 934.00 0.04 1.12 100.0 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 5.00 0.00 0.01 100.0 C19orf48P-203 retained intron GM23338 (Cell line)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 50206.00 88.38 60.25 100.0 ENST00000597420 lncRNA GM23338 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 103.00 12.67 0.12 100.0 RPS11-206 retained intron GM23338 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 340.00 41.82 0.41 100.0 RPS11-206 retained intron GM23338 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 13.00 38.24 0.02 52.0 CARMN-209 lncRNA GM23338 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 7536.00 49.50 9.04 100.0 ENST00000602478 lncRNA GM23338 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 7.00 12.28 0.01 100.0 PPFIA1P1-201 processed pseudogene GM23338 (Cell line)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 2.00 100.00 0.00 100.0 SNORD114-21-201 snoRNA GM23338 (Cell line)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 4.00 14.81 0.00 100.0 SNORD115-40-201 snoRNA GM23338 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 3.00 100.00 0.00 100.0 MIR98-201 miRNA GM23338 (Cell line)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 3.00 50.00 0.00 100.0 SNORD113-5-201 snoRNA GM23338 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 37.00 84.09 0.04 100.0 MIR15A-201 miRNA GM23338 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 89.00 46.35 0.11 100.0 SNHG21-206 retained intron GM23338 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 206.00 43.46 0.25 100.0 SNORD11B-201 snoRNA GM23338 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 388.00 61.78 0.47 100.0 SNORD91B-201 snoRNA GM23338 (Cell line)