ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1420.00 53.10 1.70 83.14 SNORD62B-201 snoRNA GM23338 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 74.00 2.77 0.09 100.0 SNORD62B-201 snoRNA GM23338 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 42.00 1.57 0.05 100.0 SNORD62B-201 snoRNA GM23338 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 30.00 1.12 0.04 100.0 SNORD62B-201 snoRNA GM23338 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 1648.00 97.00 1.98 100.0 MRPL32-203 nonsense mediated decay GM23338 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 75.00 63.56 0.09 100.0 ENST00000436739 lncRNA GM23338 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 104.00 0.87 0.12 100.0 TMEM107-204 protein coding GM23338 (Cell line)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 503.00 4.21 0.60 28.97 TMEM107-204 protein coding GM23338 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 6.00 0.05 0.01 27.27 TMEM107-204 protein coding GM23338 (Cell line)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 43.00 0.36 0.05 100.0 TMEM107-204 protein coding GM23338 (Cell line)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3530.00 33.29 4.24 64.0 SNHG16-201 lncRNA GM23338 (Cell line)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 4291.00 40.46 5.15 100.0 SNHG16-201 lncRNA GM23338 (Cell line)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 4.00 11.43 0.00 100.0 SNHG14-207 lncRNA GM23338 (Cell line)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 170753.00 97.61 204.91 99.32 SNORD105B-201 snoRNA GM23338 (Cell line)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 1646.00 73.38 1.98 98.09 SNORD121B-201 snoRNA GM23338 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 34661.00 81.48 41.60 99.78 SNORD127-201 snoRNA GM23338 (Cell line)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 1343.00 3.16 1.61 100.0 SNORD127-201 snoRNA GM23338 (Cell line)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 22536.00 85.53 27.04 100.0 SNORD42B-201 snoRNA GM23338 (Cell line)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 1085.00 42.77 1.30 100.0 RNY4P25-201 misc RNA GM23338 (Cell line)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 645.00 44.82 0.77 100.0 SNORD121A-201 snoRNA GM23338 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 79903.00 72.81 95.89 86.67 SNORD126-201 snoRNA GM23338 (Cell line)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 24253.00 22.10 29.10 64.88 SNORD126-201 snoRNA GM23338 (Cell line)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 8206.00 77.09 9.85 82.82 SNORD124-201 snoRNA GM23338 (Cell line)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 265.00 7.76 0.32 100.0 SNHG12-201 retained intron GM23338 (Cell line)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 160.00 15.67 0.19 98.16 RPL3-212 retained intron GM23338 (Cell line)