ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 429.00 97.06 0.51 100.0 MIR301B-201 miRNA GM23338 (Cell line)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1452.00 53.05 1.74 85.97 RNU1-82P-201 snRNA GM23338 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 19.00 2.30 0.02 100.0 SNORD66-201 snoRNA GM23338 (Cell line)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 83.00 10.06 0.10 100.0 SNORD66-201 snoRNA GM23338 (Cell line)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 88.00 10.67 0.11 100.0 SNORD66-201 snoRNA GM23338 (Cell line)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 96.00 11.64 0.12 57.14 SNORD66-201 snoRNA GM23338 (Cell line)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 68.00 32.38 0.08 100.0 U3.17-201 snoRNA GM23338 (Cell line)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 299.00 17.86 0.36 100.0 SNORD17-201 snoRNA GM23338 (Cell line)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 433.00 13.47 0.52 100.0 SNORD72-201 snoRNA GM23338 (Cell line)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 1922.00 69.59 2.31 100.0 SNORD70B-201 snoRNA GM23338 (Cell line)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 868.00 35.39 1.04 96.44 RNY4P18-201 misc RNA GM23338 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 1211.00 29.44 1.45 100.0 SNORD90-201 snoRNA GM23338 (Cell line)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 1288.00 31.32 1.55 75.54 SNORD90-201 snoRNA GM23338 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 389.00 0.67 0.47 100.0 SNORD69-201 snoRNA GM23338 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 54583.00 93.47 65.50 100.0 SNORD69-201 snoRNA GM23338 (Cell line)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 298.00 0.51 0.36 100.0 SNORD69-201 snoRNA GM23338 (Cell line)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 354.00 0.61 0.42 100.0 SNORD69-201 snoRNA GM23338 (Cell line)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 1964.00 43.75 2.36 92.6 SNORD70-201 snoRNA GM23338 (Cell line)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 1744.00 3.74 2.09 100.0 B4GALNT2-202 protein coding GM23338 (Cell line)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 39052.00 83.75 46.86 91.39 B4GALNT2-202 protein coding GM23338 (Cell line)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 557.00 87.58 0.67 100.0 NDE1-202 protein coding GM23338 (Cell line)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 1.00 33.33 0.00 100.0 MIR450B-201 miRNA GM23338 (Cell line)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 141.00 42.09 0.17 100.0 MIR887-201 miRNA GM23338 (Cell line)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 16187.00 82.96 19.43 100.0 SNORD111-201 snoRNA GM23338 (Cell line)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1862.00 62.95 2.23 88.79 SNORD88A-201 snoRNA GM23338 (Cell line)