ENCFF004BLT

Library Details

Organism: Homo Sapiens
Biosample: GM23338 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR722POQ
Description: Part of ENCODE experiment ENCSR722POQ. The libraries contained in this experiment come from independent growths of an induced pluripotent cell line, iPSC. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387419.1 ENST00000387419.1_1_51_+ 1–51 84.00 20.54 0.10 100.0 MT-TD-201 Mt tRNA GM23338 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_28_+ 1–28 429.00 0.85 0.51 100.0 MT-TK-201 Mt tRNA GM23338 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_31_+ 1–31 43.00 0.09 0.05 100.0 MT-TK-201 Mt tRNA GM23338 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_52_+ 1–52 13725.00 27.32 16.47 100.0 MT-TK-201 Mt tRNA GM23338 (Cell line)
ENST00000387421.1 ENST00000387421.1_1_58_+ 1–58 23991.00 47.75 28.79 100.0 MT-TK-201 Mt tRNA GM23338 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_20_+ 1–20 1705.00 17.71 2.05 81.74 MT-TS2-201 Mt tRNA GM23338 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_53_+ 1–53 48.00 0.50 0.06 100.0 MT-TS2-201 Mt tRNA GM23338 (Cell line)
ENST00000387449.1 ENST00000387449.1_1_26_+ 1–26 2935.00 30.49 3.52 100.0 MT-TS2-201 Mt tRNA GM23338 (Cell line)
ENST00000387456.1 ENST00000387456.1_1_31_+ 1–31 969.00 19.62 1.16 100.0 MT-TL2-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 3494.00 1.88 4.19 100.0 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 27.00 0.01 0.03 100.0 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 5154.00 2.78 6.19 100.0 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 5805.00 3.13 6.97 78.1 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 4550.00 2.45 5.46 85.0 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 803.00 0.43 0.96 18.42 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 88853.00 47.90 106.63 78.3 MT-TE-201 Mt tRNA GM23338 (Cell line)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 1.00 100.00 0.00 100.0 MIR196A1-201 miRNA GM23338 (Cell line)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 97.00 0.25 0.12 100.0 MT-RNR1-201 Mt rRNA GM23338 (Cell line)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 310.00 0.79 0.37 100.0 MT-RNR1-201 Mt rRNA GM23338 (Cell line)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 193.00 55.62 0.23 100.0 MIR454-201 miRNA GM23338 (Cell line)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 120.00 32.00 0.14 100.0 MIR501-201 miRNA GM23338 (Cell line)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 2451.00 90.34 2.94 100.0 MIR769-201 miRNA GM23338 (Cell line)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 364.00 73.39 0.44 100.0 KRTAP19-1-201 protein coding GM23338 (Cell line)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 60.00 37.74 0.07 100.0 MIR708-201 miRNA GM23338 (Cell line)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 10.00 90.91 0.01 100.0 MIR509-3-201 miRNA GM23338 (Cell line)