ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000665787.1 ENST00000665787.1_2059_2127_+ 2059–2127 12107.00 66.10 36.09 100.0 MEG8-240 lncRNA liver (Tissue)
ENST00000666022.1 ENST00000666022.1_1_88_+ 1–88 3787.00 23.44 11.29 100.0 SNHG14-303 lncRNA liver (Tissue)
ENST00000666663.1 ENST00000666663.1_35_81_+ 35–81 886.00 1.45 2.64 100.0 SNHG14-306 lncRNA liver (Tissue)
ENST00000666663.1 ENST00000666663.1_59_82_+ 59–82 1247.00 2.04 3.72 100.0 SNHG14-306 lncRNA liver (Tissue)
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 41488.00 67.89 123.68 98.2 SNHG14-306 lncRNA liver (Tissue)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 1724.00 2.82 5.14 100.0 SNHG14-306 lncRNA liver (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 616.00 1.57 1.84 100.0 ENST00000666735 lncRNA liver (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 14475.00 36.78 43.15 100.0 ENST00000666735 lncRNA liver (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 70439.00 80.80 209.98 100.0 MEG8-242 lncRNA liver (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 7253.55 27.67 21.62 36.51 SNHG14-312 lncRNA liver (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 12701.68 48.44 37.86 63.93 SNHG14-312 lncRNA liver (Tissue)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 488.00 1.86 1.45 100.0 SNHG14-312 lncRNA liver (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 2884.00 0.12 8.60 100.0 MEG8-244 lncRNA liver (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 3668.00 0.15 10.93 100.0 MEG8-244 lncRNA liver (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 2399466.00 97.81 7152.80 99.51 MEG8-244 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1659.00 0.10 4.95 100.0 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 4.00 0.00 0.01 100.0 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 5215.00 0.32 15.55 98.79 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 294.78 0.02 0.88 46.35 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1703.00 0.10 5.08 88.01 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 629351.00 38.05 1876.09 95.79 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 498.00 0.03 1.48 69.65 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 73423.00 4.44 218.87 99.61 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 4981.00 0.30 14.85 100.0 SNHG1-248 lncRNA liver (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 245702.00 14.85 732.44 98.22 SNHG1-248 lncRNA liver (Tissue)