ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 8084.00 5.76 24.10 68.6 SNHG14-224 lncRNA liver (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1644.51 12.20 4.90 70.16 5S_rRNA.20-201 rRNA pseudogene liver (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 1063.00 10.26 3.17 100.0 HSPA9-211 retained intron liver (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 3247.00 31.34 9.68 60.75 HSPA9-211 retained intron liver (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 24808.00 67.92 73.95 100.0 DNM3OS-205 lncRNA liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 6117.00 0.93 18.23 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 72.00 0.01 0.21 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3183.00 0.49 9.49 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 857.00 0.13 2.55 41.4 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 18407.00 2.81 54.87 97.39 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 699.00 0.11 2.08 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 395.00 0.06 1.18 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 736.00 0.11 2.19 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 356802.00 54.38 1063.63 99.29 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1050.00 0.16 3.13 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 5894.00 0.90 17.57 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 3539.00 0.54 10.55 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 920.00 0.14 2.74 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 560.00 0.09 1.67 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 271.00 0.04 0.81 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 578.00 0.09 1.72 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 6749.00 1.03 20.12 83.67 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 18776.00 2.86 55.97 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 24542.00 3.74 73.16 100.0 GAS5-230 retained intron liver (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 25882.00 3.94 77.15 95.51 GAS5-230 retained intron liver (Tissue)