ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 2249.00 0.62 6.70 100.0 U2.6-201 snRNA liver (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 796.00 1.65 2.37 75.02 ENST00000619323 lncRNA liver (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 46487.00 96.42 138.58 99.0 ENST00000619323 lncRNA liver (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 167.00 9.87 0.50 100.0 SCARNA4-202 scaRNA liver (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 2543.00 69.71 7.58 100.0 ENST00000625572 miRNA liver (Tissue)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 16901.00 91.85 50.38 100.0 ENST00000628177 snoRNA liver (Tissue)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 26924.00 95.23 80.26 100.0 ENST00000630615 snoRNA liver (Tissue)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 591.00 66.63 1.76 100.0 DMRT2-209 protein coding liver (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 23.00 2.59 0.07 100.0 DMRT2-209 protein coding liver (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 956.00 16.72 2.85 100.0 SNORD98-201 snoRNA liver (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 3701.00 64.75 11.03 100.0 SNORD98-201 snoRNA liver (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 315691.95 55.43 941.08 58.83 MIR106AHG-201 lncRNA liver (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 714.90 0.13 2.13 46.21 MIR106AHG-201 lncRNA liver (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 183.00 0.03 0.55 100.0 MIR106AHG-201 lncRNA liver (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 886.07 0.16 2.64 57.28 MIR106AHG-201 lncRNA liver (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 22809.00 41.54 67.99 100.0 MEG8-222 lncRNA liver (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 10997.00 20.03 32.78 100.0 MEG8-222 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_4119_4213_+ 4119–4213 2.00 0.00 0.01 100.0 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 13317.00 9.48 39.70 92.08 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 45491.00 32.40 135.61 90.98 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 21435.00 15.27 63.90 100.0 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 11296.00 8.05 33.67 92.14 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 419.00 0.30 1.25 100.0 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 6279.00 4.47 18.72 57.82 SNHG14-224 lncRNA liver (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 8519.00 6.07 25.40 66.57 SNHG14-224 lncRNA liver (Tissue)