ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 7107.00 65.32 21.19 94.1 RNY4P18-201 misc RNA liver (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 64124.00 91.67 191.15 100.0 SNORD90-201 snoRNA liver (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 2969.00 4.24 8.85 41.45 SNORD90-201 snoRNA liver (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 760.00 0.79 2.27 100.0 SNORD69-201 snoRNA liver (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1125.00 1.16 3.35 100.0 SNORD69-201 snoRNA liver (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 1065.00 1.10 3.17 100.0 SNORD69-201 snoRNA liver (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 89982.00 93.11 268.24 100.0 SNORD69-201 snoRNA liver (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 4379.00 52.99 13.05 69.77 SNORD70-201 snoRNA liver (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 23472.00 64.90 69.97 75.25 B4GALNT2-202 protein coding liver (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 944.00 2.61 2.81 100.0 B4GALNT2-202 protein coding liver (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1916.00 88.74 5.71 100.0 NDE1-202 protein coding liver (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 2.00 100.00 0.01 100.0 MIR208B-201 miRNA liver (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 698.00 68.03 2.08 100.0 MIR450B-201 miRNA liver (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 259.00 56.67 0.77 100.0 MIR887-201 miRNA liver (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 10946.00 88.22 32.63 100.0 MIR889-201 miRNA liver (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 4977.00 80.66 14.84 100.0 SNORD111-201 snoRNA liver (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 1863.00 54.47 5.55 80.61 SNORD88A-201 snoRNA liver (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 250.00 95.42 0.75 100.0 MIR548K-201 miRNA liver (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 139.00 55.82 0.41 100.0 MIR320B2-201 miRNA liver (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 198.00 94.29 0.59 100.0 MIR1271-201 miRNA liver (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 39.00 0.10 0.12 100.0 SNORD100-201 snoRNA liver (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 33992.00 90.45 101.33 100.0 SNORD100-201 snoRNA liver (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 1200.00 3.19 3.58 100.0 SNORD100-201 snoRNA liver (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 203.00 0.54 0.61 100.0 SNORD100-201 snoRNA liver (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 531.00 32.08 1.58 100.0 SNORD111B-201 snoRNA liver (Tissue)